neurorosettes#

GitHub Documentation Status

neurorosettes is a Python package that implements agent-based modelling to study the formation of rosette patterns in tissues during neuronal development. It is built on top of the vedo package (version 2022.1.0), which provides an interface to plot 3D objects using VTK, to prioritize the visualization of the simulations in real time, without requiring additional processing.

Installation#

The package can be downloaded through pip using pip install neurorosettes.

Usage#

neurorosettes offers multiple modules to simulate and test new biological hypothesis, such as:

  • Cell cycle and death;

  • Creation and extension of neuronal processes;

  • Physical interactions between cell bodies and neuronal processes;

Documentation#

Documentation available on ReadTheDocs.